In your CDL netlist, you need to have (at the top, although not on the first line):
Code:*.BIPOLAR
*.CAPVAL
*.RESVAL
The *.BIPOLAR is needed in order for LOGLVS to realise that it is not a MOS-only design (the use of the word bipolar is a little archaic) - essentially, the idea was that resistors and capacitors would be representing parasitics, perhaps, and so should be filtered out in normal usage for LVS.
Regards,
Andrew.